Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U A Adapter sequences adapter sequences Algorithm Algorithms Amplification bias AnnData AnnDatas B BAM BAM files Bar code, [1] Barcode Barcodes Batch effect Benchmark Bulk RNA sequencing bulk RNA-Seq bulk sequencing C cDNA Cell Cell barcode Cell state Cell type Cell type annotation cells Chromatin Cluster Clusters Codon Complementary DNA (cDNA) CpG D Demultiplexing directed graph DNA Doublets downstream analyses Downstream analysis Drop-seq Dropout E Edit distance F FASTQ FASTQ reads Flowcell flowcell G Gene expression matrix H Hamming distance I Imputation Indrop L Library Loci loci Locus M Modalities MuData Multimodal Muon muon N Negative binomial distribution P PCR Pipeline Poisson distribution Promoter Pseudotime R RNA RNA velocity RT-qPCR S SAM SAM files scanpy scverse signal-to-noise ratio Spike-in RNA Splice Junctions splice junctions T Trajectory inference U UMI Unique Molecular Identifier (UMI) Untranslated Region (UTR) UTR
