Index A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | U A Adapter sequences adapter sequences Algorithm Algorithms AnnData AnnDatas B BAM BAM files Bar code Bar codes Barcode Barcodes Batch effect Benchmark Bulk RNA sequencing C cDNA Cell Cell barcode Cell state Cell type Cell type annotation Chromatin Cluster Clusters Complementary DNA (cDNA) D Demultiplexing directed graph DNA Doublets downstream analyses Downstream analysis Drop-seq Dropout E Edit distance F FASTQ FASTQ reads Flowcell flowcell G Gene expression matrix H Hamming distance I Imputation Indrop L Library Loci loci Locus M MuData Muon muon N Negative binomial distribution P PCR Pipeline Poisson distribution Promoter Pseudotime R RNA RNA velocity RT-qPCR S SAM SAM files scanpy scverse signal-to-noise ratio Spike-in RNA Splice Junctions splice junctions T Trajectory inference U Unique Molecular Identifier (UMI) unique molecular identifiers (UMIs) Untranslated Region (UTR) UTR
